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SRX3181547: GSM2781591: HL-48 Xylose Rep2; Halomonas sp. HL48; RNA-Seq
6 ABI_SOLID (AB 5500xl Genetic Analyzer) runs: 51.9M spots, 2.6G bases, 1.5Gb downloads

Submitted by: NCBI (GEO)
Study: Phenotypic responses to interspecies competition and commensalism in a naturally-derived microbial co-culture
PRJNA406985 • SRP117464 • All experiments • All runs
show Abstracthide Abstract
Testing of response of hetertrophic partners (Halomonas sp. HL-48 and Marinobacter sp. HL-58) to both axenic and co-culture growth using both glucose and xylose Overall design: Both Halomonas sp. HL-48 and Marinobacter sp. HL-58 were grown either on glucose axenically or in co-culture and on xylose in co-culture. Halomonas HL-48 was also grown on xylose axenically. Transcriptomic data was collected under each condition and used to determine each organisms response to the other under both competitive and commensal conditions.
Sample: HL-48 Xylose Rep2
SAMN07637235 • SRS2510277 • All experiments • All runs
Organism: Halomonas sp. HL48
Library:
Instrument: AB 5500xl Genetic Analyzer
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: RNA was extracted using Trizol following by DNAseI treatment using Qiagen RNAseay mini column Template cDNA was prepared using the Applied Biosystems SOLiD® Total RNA-Seq Kit (Life Technologies, Carlsbad, CA) according to manufacturer's protocol. Sequencing was carried using the SOLiDTM 5500XL protocol (Life Technologies).
Experiment attributes:
GEO Accession: GSM2781591
Links:
Runs: 6 runs, 51.9M spots, 2.6G bases, 1.5Gb
Run# of Spots# of BasesSizePublished
SRR60312818,784,252439.2M257.9Mb2017-09-14
SRR60312828,725,129436.3M257.8Mb2017-09-14
SRR60312838,667,165433.4M251.8Mb2017-09-14
SRR60312848,723,591436.2M252.1Mb2017-09-14
SRR60312858,635,874431.8M250.5Mb2017-09-14
SRR60312868,376,563418.8M242.5Mb2017-09-14

ID:
4483500

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